An ExperimentHub Package for the Molecular Signatures Database (MSigDB)

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Documentation for package ‘msigdb’ version 1.20.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

msigdb-package	The Molecular Signatures Database (MSigDB)
appendKEGG	Add KEGG pathway derived gene sets to a collection
getIMEX	Retrieve IMEx PPI hosted on the hub
getIMEXVersions	Get IMEX versions included in the msigdb package
getMsigdb	Retrieve MSigDB data hosted on the hub
getMsigdbIDF	Retrieve MSigDB data hosted on the hub
getMsigdbVersions	Get MSigDB versions included in the msigdb package
getMsigIdType	Infer gene identifier type for the gene set collection
getMsigOrganism	Infer organism type for the gene set collection
listCollections	List all collection types within a MSigDB gene set collection
listSubCollections	List all sub-collection types within a MSigDB gene set collection
msigdb	The Molecular Signatures Database (MSigDB)
subsetCollection	Subset collections and sub-collections of MSigDB