Bayesian Network Meta-Analysis with Missing Participants


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Documentation for package ‘rnmamod’ version 0.5.0

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rnmamod-package rnmamod: Bayesian Network Meta-analysis with Missing Participants
balloon_plot Enhanced balloon plot
baseline_model The baseline model for binary outcome
bland_altman_plot The Bland-Altman plot
comp_clustering End-user-ready results for comparison dissimilarity and hierarchical clustering (Comparisons' comparability for transitivity evaluation)
covar_contribution_plot Visualising study percentage contributions against a covariate
data_preparation Prepare the dataset in the proper format for R2jags
dendro_heatmap Dendrogram with amalgamated heatmap (Comparisons' comparability for transitivity evaluation)
describe_network A function to describe the evidence base
distr_characteristics Visualising the distribution of characteristics (Comparisons' comparability for transitivity evaluation)
forestplot Comparator-specific forest plot for network meta-analysis
forestplot_juxtapose Forest plot of juxtaposing several network meta-analysis models
forestplot_metareg Comparator-specific forest plot for network meta-regression
gower_distance Weighted Gower's dissimilarity measure (Trials' comparability for transitivity evaluation)
heatmap_missing_dataset Heatmap of proportion of missing participants in the dataset
heatmap_missing_network Heatmap of proportion of missing participants in the network
heatmap_robustness Heatmap of robustness
heterogeneity_param_prior Determine the prior distribution for the heterogeneity parameter
heter_density_plot Visualising the density of two prior distributions for the heterogeneity parameter
improved_ume Detect the frail comparisons in multi-arm trials
inconsistency_variance_prior Function for the hyper-parameters of the prior distribution of the inconsistency variance (network meta-analysis with random inconsistency effects)
internal_measures_plot Internal measures for cluster validation (Comparisons' comparability for transitivity evaluation)
intervalplot_panel_ume A panel of interval plots for the unrelated mean effects model
kld_barplot Barplot for the Kullback-Leibler divergence measure (missingness scenarios)
kld_inconsistency Density plots of local inconsistency results and Kullback-Leibler divergence when 'rnmamod', 'netmeta' or 'gemtc' R packages are used
kld_inconsistency_user Density plots of local inconsistency results and Kullback-Leibler divergence (When dataset is created by the user)
kld_measure Function for the Kullback-Leibler Divergence of two normally distributed treatment effects for the same pairwise comparison
league_heatmap League heatmap for estimation
league_heatmap_pred League heatmap for prediction
league_table_absolute League table for relative and absolute effects
league_table_absolute_user League table for relative and absolute effects (user defined)
leverage_plot Leverage plot
mcmc_diagnostics Markov Chain Monte Carlo diagnostics
metareg_plot End-user-ready results for network meta-regression
missingness_param_prior Define the mean value of the normal distribution of the missingness parameter
miss_characteristics Visualising missing data in characteristics (Comparisons' comparability for transitivity evaluation)
netplot Network plot
nma.baker2009 Pharmacological interventions for chronic obstructive pulmonary disease
nma.bottomley2011 Pharmacological interventions for moderately severe scalp psoriasis
nma.dogliotti2014 Oral antithrombotics for stroke episode
nma.fluoride.donegan2018 Topical fluoride interventions for preventing dental caries
nma.liu2013 Antidepressants in Parkinson's disease
nma.malaria.donegan2018 Artemether, artesunate and quinine for severe malaria
nma.schwingshackl2014 Training modalities for patients with type 2 diabetes
nma.stowe2011 Antiparkinsonian interventions for later Parkinson's disease
nodesplit_plot End-user-ready results for the node-splitting approach
plot_study_dissimilarities Plot Gower's disimilarity values for each study (Transitivity evaluation)
pma.hetrick2012 Paroxetine versus placebo for depressive disorders
pma.taylor2004 Inositol versus glucose for depressive episode
prepare_model WinBUGS code for Bayesian pairwise or network meta-analysis and meta-regression
prepare_nodesplit WinBUGS code for the node-splitting approach
prepare_ume WinBUGS code for the unrelated mean effects model
rankosucra_plot Rankograms and SUCRA curves
rnmamod rnmamod: Bayesian Network Meta-analysis with Missing Participants
robustness_index Robustness index
robustness_index_user Robustness index when 'metafor' or 'netmeta' are used
run_metareg Perform Bayesian pairwise or network meta-regression
run_model Perform Bayesian pairwise or network meta-analysis
run_nodesplit Perform the node-splitting approach
run_sensitivity Perform sensitivity analysis for missing participant outcome data
run_series_meta Perform a series of Bayesian pairwise meta-analyses
run_ume Perform the unrelated mean effects model
scatterplots_dev Deviance scatterplots
scatterplot_sucra Scatterplot of SUCRA values
series_meta_plot End-user-ready results for a series of pairwise meta-analyses
study_perc_contrib Calculate study percentage contributions to summary treatment effects or regression coefficients
table_tau2_prior Predictive distributions for the between-study variance in a future meta-analysis on odds ratio or standardised mean difference
taylor_continuous Pattern-mixture model with Taylor series for continuous outcome
taylor_imor Pattern-mixture model with Taylor series for a binary outcome
ume_plot End-user-ready results for the unrelated mean effects model
unrelated_effects_plot End-user-ready results for unrelated trial effects model