Personalised Synthetic Controls


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Documentation for package ‘psc’ version 1.3.0

Help Pages

acc acc
bin.mod Example model for a survival outcome
cfmDataSumm Summarising data within a CFM
cfmDataVis Visualising data within a CFM
coef.psc Returns the coefficeint estimate of a psc object.
cont.mod Example model for a survival outcome
count.mod Example model for a survival outcome
data Example Dataset of patients with aHCC receiving Lenvetanib
dataComb A generic function for cleaning data ready for analysis
dataComb.flexsurvreg Function for cleaning the data of a model with class 'flexsurvreg'
dataComb.glm Function for cleaning the data of a model with class 'flexsurvreg'
dataComb.pscCFM Function for cleaning the data of a model with class
dataSumm A function which provides basic summary information of a matrix x
data_match A function to ensure that data from the cfm and data cohort are compatible
e4_data Example Dataset of patients treated with GemCap in the ESPAC-4 trial
facVis Visualising Categorical Data
facVisComp Visualising Categorical Data
gemCFM Model for a survival outcome based on Gemcitbine patietns from ESPAC-3
initParm Fucntion for estimating initial parameter values 'flexsurvreg'
initParm.flexsurvreg Fucntion for estimating initial parameter values 'flexsurvreg'
initParm.glm Fucntion for estimating initial parameter values
initParm.pscCFM Fucntion for estimating initial parameter values
lik.flexsurvreg Likelihood function for a psc model of class 'flexsurvreg'
lik.flexsurvreg.mtc Likelihood function for a psc model of class 'flexsurv' with multiple treatment comparisons
lik.glm Likelihood function for a psc model of class 'glm'
lik.glm.mtc Likelihood function for a psc model of class 'glm' with multiple treatment comparisons
linPred Estimates the linear predictor of a psc object
modelExtract A generic function for extracting model information
modelExtract.flexsurvreg A generic function for extracting model information
modelExtract.glm A generic function for extracting model information
modp modp
numVis Visualising Categorical Data
numVisComp Visualising Categorical Data
plot.psc Function for Plotting PSC objects
plot.psc.binary Function for Plotting PSC objects
plot.psc.cont Function for Plotting PSC objects
plot.psc.count Function for Plotting PSC objects #' A function which illsutrates the predicted response under the counter factual model and the observed response under the experimental treatment(s).
plot.psc.flexsurvreg Function for Plotting PSC objects
print.psc Personalised Synthetic Controls - print
print.quiet_gglist quiet_gglist
print.quiet_gtsumm quiet_gtsumm
print.quiet_list quiet_gtsumm
psc.object Fitted 'psc' object
pscCFM Creating a CFM model which can be shared
pscEst Function for performing estimation procedures in 'pscfit'
pscEst.flexsurvreg Function for estimating initial parameter values 'flexsurvreg'
pscEst.glm Function for estimating initial parameter values 'flexsurvreg'
pscEst.pscCFM Function for estimating initial parameter values 'flexsurvreg'
pscfit Personalised Synthetic Controls model fit
pscSumm Personalised Synthetic Controls - summary
summary.psc Personalised Synthetic Controls - summary
surv.mod Example model for a survival outcome
surv_fpm A function to obtain survival estimates from a flexible parametric model
visComp Visualising Comparisons between a CFM and a DC