Mutation Models for Pedigree Likelihood Computations

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Documentation for package ‘pedmut’ version 0.9.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

adjustRate	Adjust the overall mutation rate of a model
alwaysLumpable	Mutation model properties
findStationary	Find the stationary frequency distribution
getParams	Get model parameters
isBounded	Mutation model properties
isLumpable	Mutation model properties
isMutationMatrix	Test for mutation matrix/model
isMutationModel	Test for mutation matrix/model
isReversible	Mutation model properties
isStationary	Mutation model properties
lumpedMatrix	Combine alleles in a mutation matrix
lumpedModel	Combine alleles in a mutation matrix
lumpMutSpecial	Special lumping of mutation models
makeReversible	Transformations to reversibility
makeStationary	Transformation (stabilisation) to stationarity
maxRate	Upper limits for overall mutation rate for the stepwise reversible model.
model_properties	Mutation model properties
mutationMatrix	Mutation matrix
mutationModel	Mutation models
mutRate	Overall mutation rate
sexEqual	Mutation models
stabilize	Stabilization of mutation matrix
stepwiseReversible	Dawid's reversible stepwise model
validateMutationMatrix	Mutation matrix
validateMutationModel	Mutation models