Bayesian Inference of Binary, Count and Continuous Data in Toxicology


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Documentation for package ‘morseDR’ version 0.1.2

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binaryData Creates a data set for binary data analysis
binaryData.data.frame Creates a data set for binary data analysis
binaryDataCheck Checking object structure for analysis
cadmium1 Reproduction and survival data sets of chronic laboratory toxicity tests of cadmium with Daphnia
cadmium2 Reproduction and survival data sets of chronic laboratory toxicity tests of cadmium with snails
cadmium_daphnia Continuous response of toxicity test of cadmium on Daphnia
CheckData Checking object structure for analysis
chlordan Reproduction and survival data sets of chronic laboratory toxicity tests of chlordan with Daphnia
chlordan_daphnia Continuous response of toxicity test of chlordan on Daphnia
continuousData Creates a data set for binary data analysis
continuousData.data.frame Creates a data set for binary data analysis
continuousDataCheck Checking object structure for analysis
copper Reproduction and survival data sets of chronic laboratory toxicity tests of copper on Daphnia
copper_daphnia Continuous response of toxicity test of copper on Daphnia
countData Creates a data set for binary data analysis
countData.data.frame Creates a data set for binary data analysis
countDataCheck Checking object structure for analysis
dichromate Survival data set of chronic laboratory toxicity tests of dichromate with Daphnia
DoseResponse Prepare data for Dose-Reponse
doseResponse Prepare data for Dose-Reponse
doseResponse.BinaryData Prepare data for Dose-Reponse
doseResponse.ContinuousData Prepare data for Dose-Reponse
doseResponse.CountData Prepare data for Dose-Reponse
extract_sim Extract simulation from the fit
fit Fits a Bayesian concentration-response model for target-time
fit.BinaryData Fits a Bayesian concentration-response model for target-time
fit.ContinuousData Fits a Bayesian concentration-response model for target-time
fit.CountData Fits a Bayesian concentration-response model for target-time
FitTT Fits a Bayesian concentration-response model for target-time
ModelData Creates a data set for binary data analysis
modelData Creates a data set for binary data analysis
modelData.data.frame Creates a data set for binary data analysis
plant01 Continuous response of toxicity test on plants
plant02 Continuous response of toxicity test on plants
plant03 Continuous response of toxicity test on plants
plant04 Continuous response of toxicity test on plants
plant05 Continuous response of toxicity test on plants
plant06 Continuous response of toxicity test on plants
plant07 Continuous response of toxicity test on plants
plant08 Continuous response of toxicity test on plants
plant09 Continuous response of toxicity test on plants
plant10 Continuous response of toxicity test on plants
plot.BinaryData Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'.
plot.BinaryDoseResponse Plot dose-response from 'DoseResponse' objects
plot.BinaryFitTT Plotting method for 'FitTT' objects.
plot.ContinuousData Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'.
plot.ContinuousDoseResponse Plot dose-response from 'DoseResponse' objects
plot.ContinuousFitTT Plotting method for 'FitTT' objects.
plot.CountData Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'.
plot.CountDoseResponse Plot dose-response from 'DoseResponse' objects
plot.CountFitTT Plotting method for 'FitTT' objects.
plot.DoseResponse Plot dose-response from 'DoseResponse' objects
plot.PPC Plot the Posterior Predictive Chack on an object 'PPC'
plot.PriorPosterior Return Prior and Posterior density of parameters of 'FitTT' object
plot.XCX Plot an object 'XCX'
PlotData Plotting method for 'BinaryData', 'CountData' or 'ContinuousData'.
PlotDoseResponse Plot dose-response from 'DoseResponse' objects
PlotFitTT Plotting method for 'FitTT' objects.
PlotPPC Plot the Posterior Predictive Chack on an object 'PPC'
PlotRiskMeasure Plot an object 'XCX'
posterior Return Prior and Posterior density of parameters of 'FitTT' object
posterior.FitTT Return Prior and Posterior density of parameters of 'FitTT' object
PPC Posterior Predictive Check data.frame for 'FitTT' objects
ppc Posterior Predictive Check data.frame for 'FitTT' objects
ppc.BinaryFitTT Posterior Predictive Check data.frame for 'FitTT' objects
ppc.ContinuousFitTT Posterior Predictive Check data.frame for 'FitTT' objects
ppc.CountFitTT Posterior Predictive Check data.frame for 'FitTT' objects
Predict Prediction base on 'FitTT'
predict Prediction base on 'FitTT'
predict.BinaryFitTT Prediction base on 'FitTT'
predict.ContinuousFitTT Prediction base on 'FitTT'
predict.CountFitTT Prediction base on 'FitTT'
PriorPosterior Return Prior and Posterior density of parameters of 'FitTT' object
priorPosterior Return Prior and Posterior density of parameters of 'FitTT' object
priorPosterior.BinaryFitTT Return Prior and Posterior density of parameters of 'FitTT' object
priorPosterior.ContinuousFitTT Return Prior and Posterior density of parameters of 'FitTT' object
priorPosterior.CountFitTT Return Prior and Posterior density of parameters of 'FitTT' object
propiconazole Survival data set of chronic laboratory toxicity tests of propiconazole with Gammarus pulex
reco27 Continuous response of toxicity test
RiskMeasure Predict X% Concentration at the target time (default).
subst01_lymnaea Continuous response of toxicity test on snails
Summary Summary of 'FitTT' object
summary.BinaryFitTT Summary of 'FitTT' object
summary.ContinuousFitTT Summary of 'FitTT' object
summary.CountFitTT Summary of 'FitTT' object
summary.PPC Summary of 'FitTT' object
xcx Predict X% Concentration at the target time (default).
xcx.FitTT Predict X% Concentration at the target time (default).
zinc Reproduction and survival data sets of a chronic laboratory toxicity tests of zinc with Daphnia
zinc_daphnia Continuous response of toxicity test of zinc on Daphnia