Motif Discovery in Functional Data


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Documentation for package ‘funMoDisco’ version 1.0.0

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funMoDisco-package funMoDisco: Motif Discovery in Functional Data
.check_fits Check Fits
.diss_d0_d1_L2 Dissimilarity Index for Multidimensional Curves
.domain Domain Length Calculation for Curves
.find_min_diss Find Minimum Dissimilarity
.find_occurrences Find Occurrences of a Motif
.generate_coefficients Generate Coefficients
.mapply_custom Custom mapply Function for Parallel Processing
.resample Resample Vector
.select_domain .select_domain
.transform_list Transform List Structure
.transform_to_matrix Transform to Matrix
add_error_to_motif Add Additive Error to Motif
add_motif Add Motif to Base Curve
cluster_candidate_motifs Cluster Candidate Motifs
cluster_candidate_motifs_plot cluster_candidate_motifs_plot
compare_nodes Compare Nodes
discoverMotifs Functional Motif Discovery
filter_candidate_motifs Filter Candidate Motifs
find_recommended_path Find Recommended Path in a Tree Structure
funMoDisco funMoDisco: Motif Discovery in Functional Data
generateCurves Generate Functional Curves with Embedded Motifs
generateCurves-method Generate Functional Curves with Embedded Motifs
generate_background_curve Generate Background Curve
generate_curve_vector Generate Curve Vector from FD Object
get_accolites Get Accolites for a Given Leaf Label
get_minidend Generate Minimum Dendrogram from Hierarchical Clustering
get_parents Get Parent Nodes from a Given Node
get_path_complete Get Complete Paths from a Dendrogram
initialChecks Initial Checks for ProbKMA
motifSimulation-class motifSimulationS4Class
motifSimulationApp motifSimulationApp: A Shiny-Based GUI for Motif Simulation
motifSimulationBuilder Create motifSimulation Object
motifs_search Motif Search in Curves
motifs_search_plot Plot Motif Search Results
padding Pad a Matrix to a Specified Number of Rows
plot_motifs Plot Embedded Motifs in Functional Curves
plot_motifs-method Plot Embedded Motifs in Functional Curves
ProbKMA ProbKMA Class
probKMA_plot Plot the Results of probKMA
probKMA_silhouette_filter Filter Motifs from probKMA Results Based on Silhouette and Size Thresholds
probKMA_silhouette_plot Plot Silhouette Index from probKMA Results
probKMA_wrap Wrapper for the Probabilistic K-means Algorithm (ProbKMA)
recommend_node Recommend Node from a Numeric Vector
simulated200 Simulated data for local clustering
simulatedHighDimensional High Dimensional simulated data for local clustering
to_motifDiscovery to_motifDiscovery
to_motifDiscovery-method to_motifDiscovery