Spatial Bayesian Methods for Task Functional MRI Studies

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Documentation for package ‘BayesfMRI’ version 0.10.1

• DESCRIPTION file.
• Package NEWS.

Help Pages

BayesfMRI-package	BayesfMRI: Spatial Bayesian Methods for Task Functional MRI Studies
.findTheta	Perform the EM algorithm of the Bayesian GLM fitting
.getSqrtInvCpp	Get the prewhitening matrix for a single data location
.initialKP	Find the initial values of kappa2 and phi
.logDetQt	Find the log of the determinant of Q_tilde
activations	Identify field activations
aic_Param	aic
ar_order_Param	ar_order
ar_smooth_Param	ar_smooth
BayesfMRI	BayesfMRI: Spatial Bayesian Methods for Task Functional MRI Studies
BayesGLM	BayesGLM for CIFTI
BayesGLM2	Group-level Bayesian GLM
Bayes_Param	Bayes
BOLD_Param_BayesGLM	BOLD
brainstructures_Param_BayesGLM	brainstructures
buffer_Param	buffer
Connectome_Workbench_Description	Connectome Workbench
contrasts_Param	contrasts
design_Param_BayesGLM	design
do_QC	Mask out invalid data
emTol_Param	emTol
EM_Param	EM
faces_Param	faces
field_names_Param	field_names
fit_bayesglm	fit_bayesglm
hpf_Param_BayesGLM	hpf
id_activations	Identify field activations
INLA_Description	INLA
INLA_Latent_Fields_Limit_Description	INLA Latent Fields
make_mesh	Make Mesh
mask_Param_vertices	mask: vertices
max_threads_Param	max_threads
mean_var_Tol_Param	mean and variance tolerance
mesh_Param_either	mesh: either
mesh_Param_inla	mesh: INLA only
nbhd_order_Param	nbhd_order
nuisance_Param_BayesGLM	nuisance
n_threads_Param	n_threads
plot.act_BGLM	S3 method: use 'view_xifti' to plot a '"act_BGLM"' object
plot.BGLM	S3 method: use 'view_xifti' to plot a '"BGLM"' object
plot.BGLM2	S3 method: use 'view_xifti' to plot a '"BGLM2"' object
plot.prev_BGLM	S3 method: use 'view_xifti' to plot a '"prev_BGLM"' object
prevalence	Activations prevalence.
print.act_BGLM	Summarize a '"act_BGLM"' object
print.act_fit_bglm	Summarize a '"act_fit_bglm"' object
print.BGLM	Summarize a '"BGLM"' object
print.BGLM2	Summarize a '"BGLM2"' object
print.fit_bglm	Summarize a '"fit_bglm"' object
print.fit_bglm2	Summarize a '"fit_bglm2"' object
print.prev_BGLM	Summarize a '"prev_BGLM"' object
print.prev_fit_bglm	Summarize a '"prev_fit_bglm"' object
print.summary.act_BGLM	Summarize a '"act_BGLM"' object
print.summary.act_fit_bglm	Summarize a '"act_fit_bglm"' object
print.summary.BGLM	Summarize a '"BGLM"' object
print.summary.BGLM2	Summarize a '"BGLM2"' object
print.summary.fit_bglm	Summarize a '"fit_bglm"' object
print.summary.fit_bglm2	Summarize a '"fit_bglm2"' object
print.summary.prev_BGLM	Summarize a '"prev_BGLM"' object
print.summary.prev_fit_bglm	Summarize a '"prev_fit_bglm"' object
resamp_res_Param_BayesGLM	resamp_res
return_INLA_Param	return_INLA
scale_BOLD	Scale the BOLD timeseries
scale_BOLD_Param	scale_BOLD
scrub_Param_BayesGLM	scrub
seed_Param	seed
session_names_Param	session_names
summary.act_BGLM	Summarize a '"act_BGLM"' object
summary.act_fit_bglm	Summarize a '"act_fit_bglm"' object
summary.BGLM	Summarize a '"BGLM"' object
summary.BGLM2	Summarize a '"BGLM2"' object
summary.fit_bglm	Summarize a '"fit_bglm"' object
summary.fit_bglm2	Summarize a '"fit_bglm2"' object
summary.prev_BGLM	Summarize a '"prev_BGLM"' object
summary.prev_fit_bglm	Summarize a '"prev_fit_bglm"' object
surfaces_Param_BayesGLM	surfaces
trim_INLA_Param	trim_INLA
TR_Param_BayesGLM	TR
verbose_Param	verbose
vertex_areas	Surface area of each vertex
vertices_Param	vertices
vol2spde	Construct a triangular mesh from a 3D volumetric mask