$-method | Join, subset and manipulate ChIPprofile objects |
c-method | Join, subset and manipulate ChIPprofile objects |
cbind-method | Join, subset and manipulate ChIPprofile objects |
chipExampleBig | Example ChIPprofiles |
ChIPprofile | The soggi function and ChIPprofile object. |
ChIPprofile-ChIPprofile | The soggi function and ChIPprofile object. |
ChIPprofile-class | The soggi function and ChIPprofile object. |
findconsensusRegions | Plot coverage of points or regions. |
groupByOverlaps | Create GRangeslist from all combinations of GRanges |
ik_Example | Example Ikaros peaksets |
ik_Profiles | Example Ikaros signal over peaksets |
log-method | Arithmetic operations |
log2-method | Arithmetic operations |
makeMotifScoreRle | PWM hits and motif scores as an RLElist |
mean-method | Arithmetic operations |
normalise | Normalise ChIPprofiles |
normalise-method | Normalise ChIPprofiles |
normalise.ChIPprofile | Normalise ChIPprofiles |
normaliseQuantiles | Normalise quantile |
normaliseQuantiles-method | Normalise quantile |
normaliseQuantiles.ChIPprofile | Normalise quantile |
Ops-method | Arithmetic operations |
orientBy | Set strand by overlapping or nearest anchor GRanges |
plotRegion | Plot regions |
plotRegion-method | Plot regions |
plotRegion.ChIPprofile | Plot regions |
pwmCov | Example motif coverage |
pwmToCoverage | PWM hits and motif scores as an RLElist |
rbind-method | Join, subset and manipulate ChIPprofile objects |
regionPlot | The soggi function and ChIPprofile object. |
singleGRange | A single GRange |
soggi | The soggi function and ChIPprofile object. |
summitPipeline | Plot coverage of points or regions. |
[[-method | Join, subset and manipulate ChIPprofile objects |