Supporting Data for SeSAMe Package

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Documentation for package ‘sesameData’ version 1.30.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

build_GENCODE_gtf	build GENCODE gtf
df_master	Master data frame for all object to cache
extend	Extend a GRanges
inferPlatformFromProbeIDs	infer platform from Probe_IDs
sesameDataCache	Cache SeSAMe data
sesameDataCacheAll	Cache all SeSAMe data
sesameDataGet	Get SeSAMe data
sesameDataGet_checkEnv	Check whether the title exists in cacheEnv
sesameDataGet_resetEnv	Empty cache environment to free memory
sesameDataHas	Whether sesameData has
sesameDataList	List all SeSAMe data
sesameData_annoProbes	Annotate Probes by Probe ID
sesameData_check_genome	Find genome assembly version(s) supported for a platform
sesameData_check_platform	Check platform code
sesameData_getGenomeInfo	Get genome info files
sesameData_getManifestGRanges	get Infinium manifest GRanges
sesameData_getProbesByGene	Get Probes by Genes or Gene Promoters
sesameData_getProbesByRegion	Get probes by genomic region
sesameData_getTxnGRanges	convert GRangesList to transcript GRanges
sesameData_txnToGeneGRanges	convert transcript GRanges to gene GRanges