Collection of Public Single-Cell RNA-Seq Datasets


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Documentation for package ‘scRNAseq’ version 2.22.0

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scRNAseq-package Collection of Public Single-Cell RNA-Seq Datasets
allen Collection of Public Single-Cell RNA-Seq Datasets
AztekinTailData Obtain the Aztekin tail data
BacherTCellData Obtain the Bacher T cell data
BachMammaryData Obtain the Bach mammary data
BaronPancreasData Obtain the Baron pancreas data
BhaduriOrganoidData Obtain the Bhaduri cortical organoid data
BuettnerESCData Obtain the Buettner ESC data
BunisHSPCData Obtain the Bunis haematopoietic stem and progenitor cell data
CampbellBrainData Obtain the Campbell brain data
ChenBrainData Obtain the Chen brain data
countErccMolecules Obtain ERCC molecule counts from concentrations
DarmanisBrainData Obtain the Darmanis brain data
ERCCSpikeInConcentrations Obtain ERCC concentrations
ErnstSpermatogenesisData Obtain the Ernst spermatogenesis data
fetchDataset Fetch a dataset from the gypsum backend
fetchLatestVersion List available versions
fetchMetadata Fetch a dataset from the gypsum backend
FletcherOlfactoryData Obtain the Fletcher Olfactory data
fluidigm Collection of Public Single-Cell RNA-Seq Datasets
GiladiHSCData Obtain the Giladi HSC data
GrunHSCData Obtain the Grun HSC data
GrunPancreasData Obtain the Grun pancreas data
HeOrganAtlasData Obtain the He organ atlas data
HermannSpermatogenesisData Obtain the Hermann spermatogenesis data
HuCortexData Obtain the Hu cortex data
JessaBrainData Obtain the Jessa brain data
KolodziejczykESCData Obtain the Kolodziejcyzk ESC data
KotliarovPBMCData Obtain the Kotliarov CITE-seq data
LaMannoBrainData Obtain the La Manno brain data
LawlorPancreasData Obtain the Lawlor pancreas data
LedergorMyelomaData Obtain the Ledergor Myeloma data
LengESCData Obtain the Leng ESC data
listDatasets List all available datasets
listPaths List all paths for a dataset
listVersions List available versions
LunSpikeInData Obtain the Lun spike-in data
MacoskoRetinaData Obtain the Macosko retina data
MairPBMCData Obtain the Mair CITE-seq data
MarquesBrainData Obtain the Marques brain data
MessmerESCData Obtain the Messmer ESC data
MuraroPancreasData Obtain the Muraro pancreas data
NestorowaHSCData Obtain the Nestorowa HSC data
NowakowskiCortexData Obtain the Nowakowski cortex data
PaulHSCData Obtain the Paul HSC data
polishDataset Polish dataset for saving
PollenGliaData Obtain the Pollen radial glia data
ReprocessedAllenData Reprocessed single-cell data sets
ReprocessedFluidigmData Reprocessed single-cell data sets
ReprocessedTh2Data Reprocessed single-cell data sets
RichardTCellData Obtain the Richard T cell data
RomanovBrainData Obtain the Romanov brain data
saveDataset Save a dataset to disk
scRNAseq Collection of Public Single-Cell RNA-Seq Datasets
searchDatasets Search dataset metadata
SegerstolpePancreasData Obtain the Segerstolpe pancreas data
ShekharRetinaData Obtain the Shekhar retina data
StoeckiusHashingData Obtain the Stoeckius cell hashing data
surveyDatasets Survey of dataset metadata
TasicBrainData Obtain the Tasic brain data
th2 Collection of Public Single-Cell RNA-Seq Datasets
UsoskinBrainData Obtain the Usoskin brain data
WuKidneyData Obtain the Wu kidney data
XinPancreasData Obtain the Xin pancreas data
ZeiselBrainData Obtain the Zeisel brain data
ZeiselNervousData Obtain the Zeisel nervous system data
ZhaoImmuneLiverData Obtain the Zhao immune liver data
ZhongPrefrontalData Obtain the Zhong prefrontal cortex data
ZilionisLungData Obtain the Zilionis lung cancer data