An ExperimentHub Package for the Molecular Signatures Database (MSigDB)


[Up] [Top]

Documentation for package ‘msigdb’ version 1.16.0

Help Pages

msigdb-package The Molecular Signatures Database (MSigDB)
appendKEGG Add KEGG pathway derived gene sets to a collection
getIMEX Retrieve IMEx PPI hosted on the hub
getIMEXVersions Get IMEX versions included in the msigdb package
getMsigdb Retrieve MSigDB data hosted on the hub
getMsigdbIDF Retrieve MSigDB data hosted on the hub
getMsigdbVersions Get MSigDB versions included in the msigdb package
getMsigIdType Infer gene identifier type for the gene set collection
getMsigOrganism Infer organism type for the gene set collection
listCollections List all collection types within a MSigDB gene set collection
listSubCollections List all sub-collection types within a MSigDB gene set collection
msigdb The Molecular Signatures Database (MSigDB)
subsetCollection Subset collections and sub-collections of MSigDB