# Generated by roxygen2: do not edit by hand

S3method("[",compareClusterResult)
S3method("[[",compareClusterResult)
S3method(arrange,compareClusterResult)
S3method(arrange,enrichResult)
S3method(arrange,gseaResult)
S3method(as.data.frame,compareClusterResult)
S3method(as.data.frame,groupGOResult)
S3method(dim,compareClusterResult)
S3method(filter,compareClusterResult)
S3method(filter,enrichResult)
S3method(filter,gseaResult)
S3method(geneID,groupGOResult)
S3method(geneInCategory,groupGOResult)
S3method(group_by,compareClusterResult)
S3method(group_by,enrichResult)
S3method(group_by,gseaResult)
S3method(head,compareClusterResult)
S3method(mutate,compareClusterResult)
S3method(mutate,enrichResult)
S3method(mutate,gseaResult)
S3method(plot,interpretation)
S3method(plot,interpretation_list)
S3method(print,interpretation)
S3method(print,interpretation_list)
S3method(rename,compareClusterResult)
S3method(rename,enrichResult)
S3method(rename,gseaResult)
S3method(select,compareClusterResult)
S3method(select,enrichResult)
S3method(select,gseaResult)
S3method(slice,compareClusterResult)
S3method(slice,enrichResult)
S3method(slice,gseaResult)
S3method(summarise,compareClusterResult)
S3method(summarise,enrichResult)
S3method(summarise,gseaResult)
S3method(tail,compareClusterResult)
export("%<>%")
export("%>%")
export(GSEA)
export(Gff2GeneTable)
export(append_kegg_category)
export(arrange)
export(bitr)
export(bitr_kegg)
export(browseKEGG)
export(buildGOmap)
export(cnetplot)
export(compareCluster)
export(dotplot)
export(download_KEGG)
export(dropGO)
export(emapplot)
export(enrichDAVID)
export(enrichGO)
export(enrichKEGG)
export(enrichMKEGG)
export(enrichPC)
export(enrichWP)
export(enricher)
export(filter)
export(geneID)
export(geneInCategory)
export(getPPI)
export(getTaxID)
export(getTaxInfo)
export(get_organism)
export(get_wp_organisms)
export(go2ont)
export(go2term)
export(gofilter)
export(goplot)
export(groupGO)
export(group_by)
export(gseGO)
export(gseKEGG)
export(gseMKEGG)
export(gsePC)
export(gseWP)
export(gseaplot)
export(gsfilter)
export(gson_GO)
export(gson_GO_local)
export(gson_KEGG)
export(gson_KEGG_mapper)
export(gson_WP)
export(heatplot)
export(idType)
export(interpret)
export(interpret_agent)
export(interpret_hierarchical)
export(ko2name)
export(merge_result)
export(mutate)
export(n)
export(plotGOgraph)
export(read.blast2go)
export(read.gaf)
export(read.gmt)
export(read.gmt.pc)
export(read.gmt.wp)
export(rename)
export(ridgeplot)
export(search_kegg_organism)
export(select)
export(setReadable)
export(slice)
export(summarise)
export(uniprot_get)
exportClasses(groupGOResult)
exportMethods(simplify)
importClassesFrom(enrichit,compareClusterResult)
importClassesFrom(enrichit,enrichResult)
importClassesFrom(enrichit,gseaResult)
importClassesFrom(methods,data.frame)
importFrom(AnnotationDbi,
  Ontology,
  keys,
  keytypes,
  toTable
)
importFrom(GO.db,
  GOBPCHILDREN,
  GOCCCHILDREN,
  GOMFCHILDREN,
  GOTERM
)
importFrom(GOSemSim,
  buildGOmap,
  get_organism,
  godata,
  mgoSim,
  read.blast2go,
  read.gaf
)
importFrom(aisdk,
  Agent,
  ChatSession,
  generate_object,
  z_array,
  z_enum,
  z_object,
  z_string
)
importFrom(dplyr,
  arrange,
  filter,
  group_by,
  mutate,
  n,
  rename,
  select,
  slice,
  summarise
)
importFrom(enrichit,
  geneID,
  geneInCategory,
  gsfilter,
  setReadable
)
importFrom(enrichplot,
  cnetplot,
  dotplot,
  emapplot,
  goplot,
  gseaplot,
  heatplot,
  ridgeplot
)
importFrom(ggplot2,
  aes,
  geom_label,
  geom_point,
  ggplot,
  ggtitle,
  scale_color_manual,
  theme_void
)
importFrom(gson,
  gson,
  read.gmt,
  read.gmt.wp
)
importFrom(magrittr,
  "%<>%",
  "%>%"
)
importFrom(methods,
  is,
  new
)
importFrom(plyr,
  dlply,
  ldply,
  llply
)
importFrom(qvalue,qvalue)
importFrom(rlang,
  "%||%",
  .data,
  check_installed,
  quos,
  sym
)
importFrom(stats,
  formula,
  na.omit,
  setNames
)
importFrom(tidyr,
  gather,
  separate
)
importFrom(utils,
  browseURL,
  citation,
  head,
  installed.packages,
  modifyList,
  packageDescription,
  read.table,
  stack,
  str,
  tail
)
importFrom(yulab.utils,
  download_yulab_file,
  get_cache,
  get_cache_item,
  get_fun_from_pkg,
  is.installed,
  load_OrgDb,
  yread,
  yread_tsv
)
importMethodsFrom(AnnotationDbi,mappedkeys)
importMethodsFrom(AnnotationDbi,mget)
importMethodsFrom(enrichit,show)
importMethodsFrom(enrichit,summary)
