ZIBBSeqDiscovery-package | Zero-Inflated Beta-Binomial Modeling of Microbiome Count Data |
constrained.estimate | Estimate parameters with constrained approach |
constrained.loglikelihood | Define the objective function in optimization procedure for estimating parameters with constrained approach |
data.Y | Data set for ZIBBSeqDiscovery |
fitZIBB | The main function to fit ZIBB model |
free.estimate | Estimate parameters with free approach |
free.loglikelihood | Define the objective function in optimization procedure for estimating parameters with free approach |
kostic.x | Data set for ZIBBSeqDiscovery |
kostic.y | Data set for ZIBBSeqDiscovery |
mcc.adj | Using MCC method to replace NAs in the p values |
regression | Simple linear regression |
ZIBBSeqDiscovery | Zero-Inflated Beta-Binomial Modeling of Microbiome Count Data |