SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences


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Documentation for package ‘SCORER2’ version 0.99.0

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scorer2-package Predict oligomerization state of coiled-coil sequences
CreatePssm Compute profile scoring matrices for training data
EstimateProbability Estimate oligomeric state score of coiled-coil sequences
pssm Profile scoring matrix derived from the original SCORER 2.0 training set.
RetrainScorer2 Retrain the SCORER 2.0 algorithm with user-defined training data
scorer2 Predict oligomerization state of coiled-coil sequences
training Training dataset used to contruct the profile scoring matrix in the SCORER 2.0 algorithm.