Visualize Genome Coverage with Various Annotations


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Documentation for package ‘ggcoverage’ version 0.7.1

Help Pages

FormatTrack Prepare Input for Creating Coverage Plot.
geom_base Add Base and Amino Acid Annotation to Coverage Plot.
geom_coverage Layer for Coverage Plot.
geom_gc Add GC Content Annotation to Coverage Plot.
geom_gene Add Gene Annotation to Coverage Plot.
geom_ideogram Add Ideogram Annotation to Coverage Plot.
geom_peak Add Peak Annotation to Coverage Plot.
geom_transcript Add Transcript Annotation to Coverage Plot.
ggcoverage Create Coverage Plot.
LoadTrackFile Load Track File to Dataframe.
theme_aa Theme for geom_base with Amino Acid.
theme_base Theme for geom_base.
theme_base2 Theme for geom_base without margin.
theme_coverage Theme for geom_coverage.
theme_coverage2 Theme for geom_coverage.
theme_gc Theme for geom_gc.
theme_gene Theme for geom_gene.
theme_ideogram Theme for geom_ideogram.
theme_peak Theme for geom_peak.
theme_transcript Theme for geom_transcript.