Interpretation of Forensic DNA Mixtures

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Documentation for package ‘forensim’ version 4.3.3

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forensim-package The forensim package
$-method Accessors for forensim objects
$<--method Accessors for forensim objects
A2.simu A Tcl/Tk graphical user interface for simple DNA mixtures resolution using allele peak heights or areas information when two alleles are observed at a given locus
A3.simu A Tcl/Tk graphical user interface for simple DNA mixtures resolution using allele peak heights or areas when three alleles are observed at a given locus
A4.simu A Tcl/Tk graphical user interface for simple DNA mixtures resolution using allele peak heights or areas when four alleles are observed at a given locus
as.simugeno simugeno constructor
as.simumix simumix constructor
as.tabfreq tabfreq constructor
changepop Function to change population-related information in forensim objects
characterOrNULL-class Virtual classes for forensim
Cmn The number of all possible combinations of m elements among n with repetitions
comb Generate all possible combinations of m elements among n with repetitions
dataL Generic formula of the likelihood of the observed alleles in a mixture conditional on the number of contributors for a specific locus
factorOrNULL-class Virtual classes for forensim
findfreq Finds the allele frequencies of a mixture from a tabfreq object
findmax Function to find the maximum of a vector and its position
forensim The forensim package
Hbsimu A Tcl/Tk simulator of the heterozygous balance
is.simugeno simugeno constructor
is.simumix simumix constructor
is.tabfreq tabfreq constructor
lik Likelihood of the observed alleles at different loci in a DNA mixture conditional on the number of contributors to the mixture
lik.loc Likelihood per locus of the observed alleles in a DNA mixture conditional on the number of contributors to the mixture
likestim Maximum likelihood estimation of the number of contributors to a forensic DNA mixture for a set of loci
likestim.loc Maximum likelihood estimation per locus of the number of contributors to forensic DNA mixtures.
likEvid Likelihood of DNA evidence conditioned on a given hypothesis
listOrdataframe-class Virtual classes for forensim
LR Likelihood ratio for DNA evidence interpretation (2): a sophistacted version of function LR()
LRmixTK GUI for the LR function
mastermix A Tcl/Tk graphical user interface for simple DNA mixtures resolution using allele peak heights/ or areas information
matrixOrdataframe-class Virtual classes for forensim
mincontri Minimum number of contributors required to explain a forensic DNA mixture
N2error Calculates exact error for maximum allele count for two markers
N2Exact Calculates exact allele distribution for 2 contributors
names-method forensim class for simluated genotypes
names-method forensim class for DNA mixtures
names-method forensim class for population allele frequencies
naomitab Handling of missing values in a data frame
nball Number of alleles in a mixture
ngm Allele frequencies for the new generation markers NGM, for the Caucasian US population
PE The random man exclusion probability
print-method forensim class for simluated genotypes
print-method forensim class for DNA mixtures
print-method forensim class for population allele frequencies
PV Predictive value of the maximum likelihood estimator of the number of contributors to a DNA mixture
sgmNorway Allele frequencies for the new generation markers sgm, for the Norwegian population
show-method forensim class for simluated genotypes
show-method forensim class for DNA mixtures
show-method forensim class for population allele frequencies
simMixSNP Simulates SNP mixtures
simPCR2 Polymorphism chain reaction simulation model
simPCR2TK A Tcl/Tk graphical interface for the polymorphism chain reaction simulation model
simufreqD Function to simulate allele frequencies for independent loci from a Dirichlet model
simugeno simugeno constructor
simugeno-class forensim class for simluated genotypes
simugeno-methods simugeno constructor
simumix simumix constructor
simumix-class forensim class for DNA mixtures
simumix-methods simumix constructor
simupopD Simulate multi-population allele frequencies for independent loci from a reference population, following a Dirichlet model
strusa Allele frequencies for 15 autosomal short tandem repeats core loci on U.S. Caucasian, African American, and Hispanic populations.
strveneto Population study of three miniSTR loci in Veneto (Italy)
tabfreq tabfreq constructor
tabfreq-class forensim class for population allele frequencies
tabfreq-methods tabfreq constructor
Tu Allele frequencies of 15 autosomal short tandem repeats loci on Chinese Tu ethnic minority group
vectorOrdataframe-class Virtual classes for forensim
vectorOrNULL-class Virtual classes for forensim
wrapdataL ML estimate of number of contributors for SNPs