Model Elemental Fluxes in Fishes


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Documentation for package ‘fishflux’ version 0.0.1.6

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fishflux-package The 'fishflux' package.
aspect_ratio A function to find aspect ratio
check_name_fishbase Returns error if name is incorrect
cnp_mcmc cnp_mcmc
cnp_model_mcmc A function to predict N and P excretion, CNP egestion, CNP ingestion rate, using MCMC and stan
extract A function to extract specific model output parameters from result
find_lw A function to find length-weight relationship parameters a and b
fishflux The 'fishflux' package.
growth_params A function to find growth parameters on fishbase
limitation A function to evaluate element limitation of the model
metabolic_parameters Data with metabolic parameters on family level
metabolic_rate A function to calculate metabolic rates
metabolism A function to estimate f0 and alpha
model_parameters A function to find a set of parameters
name_errors A function to find errors in fish species names
param_zebsco List of all parameters needed to run cnp_model for *Zebrasoma scopas*
plot_cnp A function to plot results model
sensitivity A function to check the sensitivity of cnp_model predictions based on the variation of input parameters
trophic_level A function to find trophic level
weight_prop Data frame with dry weight/ wet weight proportions for multiple reef fish families.
wprop A function to find the ratio of dry weight and wet weight of fish in local database