calEdgeCorScore | Calculate the differential correlation score for edges |
class.labels | The example data in the environment variable of the system |
controlcharactor | The example data in the environment variable of the system |
dataset | The example data in the environment variable of the system |
EdgesBackgrandData | The data for the background set of edges |
envData | The variables in the environment variable 'envData' of the system |
ESEA.Main | Identify dysregulated pathways based on edge set enrichment analysis |
GetEdgesBackgrandData | Get the data for background set of edges |
GetExampleData | Get the example data |
GetPathwayEdgeData | Get the edge sets of pathways |
PathwayEdgeData | The edge sets of pathways |
PlotGlobEdgeCorProfile | Plot global edge correlation profile |
PlotPathwayGraph | Plot the pathway-result network diagram |
PlotRunEnrichment | Plot running Edge enrichment score |
Results | The example data in the environment variable of the system |
SavePathway2File | Save a pathway-result network to a file which can be input to the Cytoscape software |