aggregate_gsas          Aggregate MEDITS data across multiple GSAs
ALK                     ALK (Age Length Key)
ALKf                    Estimation of ALK
BioIndex                Main function to perform BioIndex analysis
bubble_plot_by_haul_indexes
                        Bubble plot of abundance and biomass indices by
                        haul
bubbleplot_RS_by_hauls
                        Bubbleplot of abundance indices for recruits
                        and spawners
centroidi               centroidi
cgpmgrid                cgpmgrid
check_date_haul         Check date haul (RoME)
check_dictionary        Check dictionary (RoME)
check_hauls_TBTA        Check hauls TB TA (RoME)
check_numeric_range     Check numeric range (RoME)
continent               continent
convert_coordinates     MEDITS coordinates in decimal degrees
dd.distance             Estimate hauls distances (decimal degrees)
dd.to.MEDITS            Conversion of decimal degrees coordinates in
                        MEDITS format
hauls_position          Plot of hauls time series
index_on_grid           Generating maps of indexes
index_recr              Estimation of abundance indices for recruits
index_spawn             Estimation of abundance indices for spawners
                        (females)
index_ts_F              Estimation of abundance indices for females
index_ts_M              Estimation of abundance indices for males
indices_ts              Estimation of abundance and biomass indices
IUT                     Interception Union Tets
LFD                     Length Frequency Distribution (LFD) Estimation
                        and Plotting
Lquant                  Estimation of L50 and L95
LW                      LW (Length-Weight relationship)
LWf                     Estimation of LW relationship
med_bathy               Mediterranean and Black Sea bathymetry
                        (0â€“1000 m, bathy object)
MEDITS.distance         Estimation of haul distance
MEDITS.to.dd            Conversion of MEDITS format coordinates in
                        decimal degrees format
merge_TATB              Merge TA and TB tables (haul-level catches)
merge_TATBTC            Merge TAâ€“TB and TAâ€“TC tables (MEDITS
                        protocol)
merge_TATC              Merge TA and TC tables (haul-level
                        lengthâ€“frequency data)
MIW                     Estimation of Mean Individual Weight (MIW) time
                        series
overlayGrid             Overlay mTATB and mTATC on GFCM spatial grid
quant                   Quantile estimation
run_BioIndex_app        launches the embedded Shiny application
                        included in the package.
sex_ratio               Sex ratio
sex_ratio_on_grid       Plot sex ratio spatial distribution
spear                   Spearman test for timeseries
spearman                Spearman test
strata_scheme           stratification scheme
strata_scheme_rapana    stratification scheme (rapa whelk)
stratification          stratification
stratification_rapana   stratification (rapa whelk)
stratum_0_125           stratum_0_125
stratum_0_200           stratum_0_200
stratum_0_35            stratum_0_35
stratum_0_45            stratum_0_45
stratum_0_800           stratum_0_800
stratum_200_800         stratum_200_800
TA                      TA table example
TA_cols                 TA table headings
TB                      TB table example
TB_cols                 TB table headings
TC                      TC table example
TC_cols                 TC table headings
