Bayesian Prior Elicitation, Diagnostics, and Regulatory Reporting


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Documentation for package ‘bayprior’ version 0.4.0

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bayprior-package bayprior: Bayesian Prior Elicitation, Diagnostics, and Regulatory Reporting
aggregate_experts Aggregate multiple expert priors into a consensus prior
as_prior Constructor for bayprior from raw parameters
bayprior bayprior: Bayesian Prior Elicitation, Diagnostics, and Regulatory Reporting
calibrate_power_prior Calibrate power prior weight via Bayes Factor
conflict_mahalanobis Multivariate prior-data conflict via Mahalanobis distance
elicit_beta Elicit a Beta prior via quantile matching or moment matching
elicit_exponential Elicit an Exponential prior via moments, rate, or quantile matching
elicit_gamma Elicit a Gamma prior via quantile matching or moment matching
elicit_lognormal Elicit a Log-Normal prior via quantile matching or moment matching
elicit_mixture Elicit a mixture prior
elicit_normal Elicit a Normal prior via quantile matching or moment matching
elicit_roulette Roulette-method elicitation (chip-allocation)
elicit_weibull Elicit a Weibull prior via moments, direct parameters, or quantile matching
historical_effect_sizes Compute (y, se) inputs for map_prior() from raw historical-trial data
map_prior Derive a meta-analytic-predictive (MAP) prior from historical trials
plot.bayprior_power_prior Plot calibration curve for power prior weight selection
plot_prior_likelihood Plot prior, likelihood, and posterior density overlays
plot_sensitivity Plot sensitivity analysis results
plot_tau_posterior Plot the posterior distribution of the heterogeneity parameter (tau)
plot_tornado Tornado plot of prior influence on posterior quantities
print.bayprior Print method for bayprior objects
print.bayprior_conflict Print method for bayprior_conflict objects
print.bayprior_conflict_mv Print method for multivariate conflict objects
print.bayprior_power_prior Print method for bayprior_power_prior objects
prior_conflict Compute prior-data conflict diagnostics
prior_report Generate a Prior Justification Report
resolve_tau_prior Resolve the default heterogeneity (tau) prior for an outcome type
robust_prior Construct a robust (heavy-tailed mixture) prior
run_app Run the bayprior Shiny Application
sceptical_prior Construct a sceptical (penalised-enthusiasm) prior
sensitivity_cri Credible interval sensitivity over prior hyperparameters
sensitivity_grid Sensitivity grid over prior hyperparameters
summary.bayprior Summary method for bayprior objects