Single-Cell Trajectory Analysis Utilities


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Documentation for package ‘TrajectoryUtils’ version 1.12.0

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$-method The PseudotimeOrdering class
$<--method The PseudotimeOrdering class
averagePseudotime Compute the average pseudotime
cellData The PseudotimeOrdering class
cellData<- The PseudotimeOrdering class
cellData<--method The PseudotimeOrdering class
cellnames The PseudotimeOrdering class
cellnames<- The PseudotimeOrdering class
cellnames<--method The PseudotimeOrdering class
createClusterMST Minimum spanning trees on cluster centroids
createClusterMST-method Minimum spanning trees on cluster centroids
defineMSTPaths Define paths through the MST
guessMSTRoots Guess the roots of a MST
ncells The PseudotimeOrdering class
npaths The PseudotimeOrdering class
pathData The PseudotimeOrdering class
pathData<- The PseudotimeOrdering class
pathData<--method The PseudotimeOrdering class
pathnames The PseudotimeOrdering class
pathnames<- The PseudotimeOrdering class
pathnames<--method The PseudotimeOrdering class
pathStat The PseudotimeOrdering class
pathStat<- The PseudotimeOrdering class
pathStat<--method The PseudotimeOrdering class
pathStatNames The PseudotimeOrdering class
pathStatNames<- The PseudotimeOrdering class
pathStatNames<--method The PseudotimeOrdering class
pathStats The PseudotimeOrdering class
pathStats<- The PseudotimeOrdering class
pathStats<--method The PseudotimeOrdering class
PseudotimeOrdering The PseudotimeOrdering class
PseudotimeOrdering-class The PseudotimeOrdering class
rowmean Compute column means based on a grouping variable
rowmedian Compute column means based on a grouping variable
show-method The PseudotimeOrdering class
splitByBranches Split a graph into branch-free paths