Datasets for signatureSearch package


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Documentation for package ‘signatureSearchData’ version 1.22.0

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cmap CMap2 LFC Signature Database
cmap_expr CMap Intensity Signature Database
cmap_rank Cmap Rank Signature Database
combineNormRes Combine Normalized Data from Different Chip Types
combineResults Combine Batch-processed Normalization Results
dtlink_db_clue_sti Drug-Target Annotation Resources
ES_NULL Null Distribution of WTCS from 'gess_lincs' Method
getCmapCEL Download CMap2 CEL Files
goAnno GO Term to Gene SYMBOLs Mapping Annotation
goAnno_drug GO Term ID to Drug Name Mapping Annotation
GO_DATA GO Annotation Environment
GO_DATA_drug GO to Drug Annotation Environment
inst_filter Filter LINCS Level 3 by Condition
lincs LINCS Z-score Signature Database
lincs_expr LINCS Intensity Signature Database
meanExpr Calculate Mean Value for Replicated Samples
normalizeCel Normalize CEL Files
probe2gene Transform Probe Set to Gene Level Data
runLimma DEG Analysis with Limma
sampleList Generate List of Treatment vs. Control Samples
signatureSearchData signatureSearchData: Reference Data for Gene Expression Signature Searching
sig_filter Filter LINCS Level 5 by Condition
taurefList Lookup Table for Computing Tau Scores