ropls-package |
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data |
aminoacids |
Amino-Acids Dataset |
cellulose |
NIR-Viscosity example data set to illustrate multivariate calibration using PLS, spectral filtering and OPLS |
checkW4M |
Checking the consistency of a SummarizedExperiment or ExpressionSet instance with W4M format |
checkW4M-method |
Checking the consistency of a SummarizedExperiment or ExpressionSet instance with W4M format |
coef-method |
Coefficients method for (O)PLS models |
coef.opls |
Coefficients method for (O)PLS models |
cornell |
Octane of various blends of gasoline |
fitted-method |
Fitted method for 'opls' objects |
fitted.opls |
Fitted method for 'opls' objects |
foods |
Food consumption patterns accross European countries (FOODS) |
fromW4M |
fromW4M |
getEset |
getEset method |
getEset, |
getEset method |
getEset-method |
getEset method |
getLoadingMN |
getLoadingMN method for PCA/(O)PLS(-DA) models |
getLoadingMN-method |
getLoadingMN method for PCA/(O)PLS(-DA) models |
getMset |
getMset method |
getMset, |
getMset method |
getMset-method |
getMset method |
getOpls |
Getting the models from a SummarizedExperiment or a MultiAssayExperiment object |
getOpls-method |
Getting the models from a SummarizedExperiment or a MultiAssayExperiment object |
getPcaVarVn |
getPcaVarVn method for PCA models |
getPcaVarVn-method |
getPcaVarVn method for PCA models |
getScoreMN |
getScoreMN method for PCA/(O)PLS(-DA) models |
getScoreMN-method |
getScoreMN method for PCA/(O)PLS(-DA) models |
getSubsetVi |
getSubsetVi method for (O)PLS(-DA) models |
getSubsetVi-method |
getSubsetVi method for (O)PLS(-DA) models |
getSummaryDF |
getSummaryDF method for PCA/(O)PLS models |
getSummaryDF-method |
getSummaryDF method for PCA/(O)PLS models |
getVipVn |
getVipVn method for (O)PLS(-DA) models |
getVipVn-method |
getVipVn method for (O)PLS(-DA) models |
getWeightMN |
getWeightMN method for (O)PLS(-DA) models |
getWeightMN-method |
getWeightMN method for (O)PLS(-DA) models |
imageF |
view |
linnerud |
Linnerud Dataset |
lowarp |
A multi response optimization data set (LOWARP) |
mark |
'mark' Dataset |
NCI60 |
Microarray gene expression profiles of the NCI 60 cell lines from 4 different platforms |
opls |
PCA, PLS(-DA), and OPLS(-DA) |
opls-class |
Class "opls" |
opls-method |
getEset method |
opls-method |
PCA, PLS(-DA), and OPLS(-DA) |
oplsMultiDataSet-class |
Class "oplsMultiDataSet" |
oplsMultiDataSet-method |
getMset method |
plot-method |
Plot Method for (O)PLS(-DA) |
plot.opls |
Plot Method for (O)PLS(-DA) |
plot.oplsMultiDataSet |
Plot Method for (O)PLS(-DA) |
plot_score |
PCA and (O)PLS(-DA) score plots |
plot_score-method |
PCA and (O)PLS(-DA) score plots |
predict-method |
Predict method for (O)PLS models |
predict.opls |
Predict method for (O)PLS models |
print-method |
Print method for 'opls' objects |
print.opls |
Print method for 'opls' objects |
residuals |
Residuals method for (O)PLS models |
residuals-method |
Residuals method for (O)PLS models |
residuals.opls |
Residuals method for (O)PLS models |
ropls |
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data |
sacurine |
Analysis of the human adult urinary metabolome variations with age, body mass index and gender |
show-method |
Show method for 'opls' objects |
show.opls |
Show method for 'opls' objects |
strF |
view |
tested |
Tested method for (O)PLS models |
tested-method |
Tested method for (O)PLS models |
toW4M |
Exporting a SummarizedExperiment or ExpressionSet instance into 3 tabulated files. |
toW4M-method |
Exporting a SummarizedExperiment or ExpressionSet instance into 3 tabulated files. |
view |
view |
view-method |
view |