A set of annotation maps describing the entire Human Phenotype Ontology


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Documentation for package ‘HPO.db’ version 0.99.2

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columns AnnotationDb objects and their progeny, methods etc.
columns-method AnnotationDb objects and their progeny, methods etc.
HPO Bioconductor annotation data package
HPO.db Bioconductor annotation data package
HPOALIAS Map from HPO alias to HPO terms
HPOANCESTOR Annotation of HPO Identifiers to their Ancestors
HPOCHILDREN Annotation of HPO Identifiers to their Children
HPODb-class AnnotationDb objects and their progeny, methods etc.
HPODO Annotation of HPO Identifiers to DO ID
HPOGENE Annotation of HPO Identifiers to gene ID
HPOMAPCOUNTS Number of mapped keys for the maps in package HPO.db
HPOmetadata Annotation of HPO Identifiers to HPO Terms
HPOMPO Annotation of HPO Identifiers to MPO ID
HPOOBSOLETE Annotation of HPO identifiers by terms defined by Human Phenotype Ontology Consortium and their status are obsolete
HPOOFFSPRING Annotation of HPO Identifiers to their Offspring
HPOPARENTS Annotation of HPO Identifiers to their Parents
HPOSYNONYM Map from HPO synonyms to HPO terms
HPOTERM Annotation of HPO Identifiers to HPO Terms
HPO_dbconn Collect information about the package annotation DB
HPO_dbfile Collect information about the package annotation DB
HPO_dbInfo Collect information about the package annotation DB
HPO_dbschema Collect information about the package annotation DB
keys AnnotationDb objects and their progeny, methods etc.
keys-method AnnotationDb objects and their progeny, methods etc.
keytypes AnnotationDb objects and their progeny, methods etc.
keytypes-method AnnotationDb objects and their progeny, methods etc.
select AnnotationDb objects and their progeny, methods etc.
select-method AnnotationDb objects and their progeny, methods etc.