channelNames | Getting and setting the channel and image names |
channelNames-method | Getting and setting the channel and image names |
channelNames<- | Getting and setting the channel and image names |
channelNames<--method | Getting and setting the channel and image names |
coerce-method | S4 class for list of images |
compImage | Performs channel compensation on multi-channel images |
CytoImageList | S4 class for list of images |
CytoImageList-class | S4 class for list of images |
CytoImageList-manipulation | Manipulating CytoImageList objects |
CytoImageList-naming | Getting and setting the channel and image names |
CytoImageList-subsetting | General subsetting methods for CytoImageList objects |
cytomapperShiny | Shiny application to visualise gated cells on images |
getChannels | General subsetting methods for CytoImageList objects |
getChannels-method | General subsetting methods for CytoImageList objects |
getImages | General subsetting methods for CytoImageList objects |
getImages-method | General subsetting methods for CytoImageList objects |
loadImages | Read images into CytoImageList object |
measureObjects | Compute morphological and intensity features from objects on images. |
mergeChannels | General subsetting methods for CytoImageList objects |
names-method | Getting and setting the channel and image names |
names<--method | Getting and setting the channel and image names |
normalize | Manipulating CytoImageList objects |
normalize-method | Manipulating CytoImageList objects |
pancreasImages | Example CytoImageList object of image files |
pancreasMasks | Example CytoImageList object of segmentation masks |
pancreasSCE | Example SingleCellExperiment object |
plotCells | Function to visualize cell-level information on segmentation masks |
plotPixels | Function to visualize pixel-level information of multi-channel images |
plotting-param | Further plotting parameters for the cytomapper package |
scaleImages | Manipulating CytoImageList objects |
scaleImages-method | Manipulating CytoImageList objects |
setChannels<- | General subsetting methods for CytoImageList objects |
setChannels<--method | General subsetting methods for CytoImageList objects |
setImages<- | General subsetting methods for CytoImageList objects |
setImages<--method | General subsetting methods for CytoImageList objects |
show-method | S4 class for list of images |
[<--method | General subsetting methods for CytoImageList objects |
[[<--method | General subsetting methods for CytoImageList objects |