Index of Reference Cell Type Datasets


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Documentation for package ‘celldex’ version 1.18.0

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BlueprintEncodeData Obtain human bulk RNA-seq data from Blueprint and ENCODE
DatabaseImmuneCellExpressionData Obtain human bulk RNA-seq data from DICE
fetchLatestVersion List available references
fetchMetadata Fetch a reference dataset
fetchReference Fetch a reference dataset
HumanPrimaryCellAtlasData Obtain the HPCA data
ImmGenData Obtain mouse bulk expression data from the Immunologic Genome Project
listReferences List available references
listVersions List available references
MonacoImmuneData Obtain bulk RNA-seq data of sorted human immune cells
MouseRNAseqData Obtain mouse bulk expression data of sorted cell populations (RNA-seq)
NovershternHematopoieticData Obtain bulk microarray expression for sorted hematopoietic cells
saveReference Save a reference dataset
searchReferences Search reference metadata
surveyReferences Survey reference metadata