A Method for Simulating Data from Perturbed Biological Pathways


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Documentation for package ‘simPATHy’ version 0.6

Help Pages

chimera Chimera data
easyLookDys Dysregulation summary
easyLookShiny Visual dysregulation summary
fitSgraph Estimate covariance matrix of a graphical model
generatePath Find one path in a graph
getPathShiny Choose a path in a graph from an interactive shiny app
graphNELD3-shiny Shiny bindings for plotGraphNELD3
graphNELD3Output Shiny bindings for plotGraphNELD3
makePositiveDefinite Positive definite matrix
plotCorGraph Plot correlation or partial correlation matrix
plotGraphNELD3 Dynamic plot of a graph
renderGraphNELD3 Shiny bindings for plotGraphNELD3
simPATHy Simulate data from a graphical model
SMLEdecomposable Local Maximum Likelihood Estimation