Stable Isotope Analysis in R

[Up] [Top]

Documentation for package ‘siar’ version 4.2

Help Pages

siar-package Stable Isotope Analysis in R.
allgroups The entire set of Geese isotope data
bayesMVN Bayesian MVN
bayestwoNorm Bayesian Independent Normal Distributions
concdepdemo Concentration dependence values for the geese demo data
convexhull Convex Hull
correctionsdemo Fractionation correction values for the geese data
geese1demo A single group of the geese data
geese2demo A multi-group version of the geese plasma data
hullarea Convex Hull Area
laymanmetrics Isotope-space Niche Width Metrics
newgraphwindow Opens a new graphics window on a variety of platforms
overlap Area of overlap between two estimated ellipses
panelcontour Adds contours to a matrix plot
panelcor Adds correlations to a matrix plot
panelhist Adds histograms to the diagonal of a matrix plot
plotSigmaEllipse Plot an ellipse based on a correlation matrix
popSEA Standard Ellipse Metrics for the Population
siar Stable Isotope Analysis in R.
siaraddcross Plotting tool for adding isotope bi-plot data to a figure
siardemo Runs the siar model and some nice plots for the siar package
siardensityplot SIAR's Custom Density Plot
siarelicit Elicit prior parameters for the Dirichlet distribution.
siarhdrs Creates hdrs and convergence diagnostics from siar output
siarhistograms Produce neat siar histograms
siarloaddata Loads in siar data
siarmatrixplot Matrix plots of siar output
siarmcmcdirichletv4 MCMC for stable isotope data
siarmenu A list of menu options for running the siar package
siarmultigrouprun siar MCMC for multi-group data
siarplotdata Produces plots of target data and sources
siarplotdatawrapper Handles repeated plotting instructions for siarplotdata()
siarplottarget Plots the consumers' data in isotope space
siarproportionbygroupplot siar proportion plots by group
siarproportionbysourceplot siar proportion plots by source
siarsaveoutput Saves siar output to a file
siarsinglegrouprun siar MCMC for single group data
siarsolomcmcv4 MCMC for stable isotope data with only single target organisms
siarsolomultigrouprun siar MCMC for multi-group data with only one target organism per group
siarsolosinglegrouprun siar MCMC for single group data with only one organism
siber.ellipses The SIBER method for calculating ellipse based metrics of niche width
siber.hull.metrics The SIBER method for calculating Convex Hull based metrics of niche width
sourcesdemo Source (in this case plant) isotope values
standard.ellipse Standard Ellipse