available_results | Extract final configurations into a data frame |
cluster_overlap | Create a table of module overlap for two clusterings |
fast_cor | Fast computation of correlation |
find_module_sizes | Determine module sizes |
get_avg_num_regulators | Get the average number of active regulators per module |
get_num_final_configs | Return the number of final configurations |
get_rand_indices | Compute Rand indices |
get_regulator_list | Return list of regulator genes |
get_target_gene_modules | Extract target gene modules for given penalization parameters |
kmeanspp | Perform the k-means++ algorithm |
plot_module_count_helper | Plot average silhouette scores and average predictive R^2 |
plot_regulator_network | Plotting the regulatory table from scregclust as a directed graph |
plot_silhouettes | Plot individual silhouette scores |
scregclust | Uncover gene modules and their regulatory programs from single-cell data |
scregclust_format | Package data before clustering |