Bayesian Population Genomics in Autopolyploids


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Documentation for package ‘polyfreqs’ version 1.0.2

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get_map_genotypes Maximum _a posteriori_ (MAP) estmation of autopolyploid genotypes
point_Hexp Estimation of expected heterozygosity
point_Hobs Estimation of observed heterozygosity
polyfreqs Bayesian population genomics in autopolyploids
polyfreqs_pps Posterior predictive model checks for polyfreqs
ref_reads Reference reads matrix
simple_freqs Point estimation of allele frequencies based on read counts
sim_reads Simulation of sequencing read counts and genotypes
total_reads Total reads matrix