Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data

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Documentation for package ‘LICORS’ version 0.2.0

• DESCRIPTION file.
• Package NEWS.

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LICORS-package	Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
complete_LICORS_control	Utilities for "LICORS" class
compute_LC_coordinates	Computes coordinates of PLC and FLC relative to origin
compute_LICORS_loglik	Log-likelihood of LICORS model
compute_margin_coordinates	Get LC configuration from a (N+1)D field
compute_mixture_penalty	Penalty of mixture weights
compute_NEC	Compute Negative Entropy Criterion (NEC)
contCA00	Simulated 7 state (1+1)D field
data2LCs	Iterate over (N+1)D field and get all LC configurations
embed2	Improved embed() function
estimate_LC.pdf.state	Estimate PLC/FLC distributions for all states
estimate_LC_pdfs	Estimate PLC/FLC distributions for all states
estimate_LC_pdf_state	Estimate PLC/FLC distributions for all states
estimate_state_adj_matrix	Estimate adjacency matrix for equivalent FLC distributions based on states
estimate_state_probs	Estimate conditional/marginal state probabilities
get_LC_config	Get configuration of a light cone (LC)
get_spacetime_grid	Get an iterator over the space-time coordinates of the field.
image2	Improved image() function
initialize_states	State initialization for iterative algorithms (randomly or variants of kmeans)
kmeanspp	Kmeans++
LC-utils	Utilities for LC class
LC_coordinates2control_settings	Utilities for LC class
LICORS	Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
make_legend	Improved image() function
merge_states	Merge several states into one
mixed_LICORS	Mixed LICORS: An EM-like Algorithm for Predictive State Space Estimation
mixed_LICORS-utils	Utilities for "LICORS" class
mv_wKDE	Weighted kernel density estimator (wKDE)
normalize	Normalize a matrix/vector to sum to one (probability simplex)
plot.LC	Utilities for LC class
plot.mixed_LICORS	Utilities for "LICORS" class
predict.mixed_LICORS	Utilities for "LICORS" class
predict_FLC_given_PLC	Predict FLCs given new PLCs
rdensity	Generate random sample from density() or wKDE
relabel_vector	Relabels a vector to consecutive labels
remove_small_sample_states	Reassign low sample states to close states
search_knn	K nearest neighbor (KNN) search
setup_LC_geometry	Setup light cone geometry
sparsify_weights	Sparsify weights
states2weight_matrix	Converts label vector to 0/1 mixture weight matrix
summary.LC	Utilities for LC class
summary.mixed_LICORS	Utilities for "LICORS" class
threshold	Threshold a matrix/vector below and above
weight_matrix2states	Returns unique state assignment from a (row-wise) weight matrix
wKDE	Weighted kernel density estimator (wKDE)