IsoGene-package |
IsoGene |
dopamine |
Dose-response microarray example data |
exampleData |
Dose-response microarray example data |
Isoallfdr |
Obtaining the delta table in the SAM procedure |
IsoBHPlot |
Plot of adjusted p-values using BH or BY adjustment |
Isofudge |
Calculation of the fudge factor for the five SAM test statistics in the SAM procedure |
IsoGene |
IsoGene |
IsoGene1 |
The five test statistics calculated for both the increasing and decreasing trends |
IsoGenem |
The five test statistics calculated for both the increasing and decreasing trends |
IsoGenemSAM |
The five SAM test statistics calculated for both the increasing and decreasing trends |
IsomaxT |
The maxT procedure for order restricted inference |
IsoPlot |
IsoPlot |
IsopvaluePlot |
Plot of p-values from permutations under increasing or decreasing alternatives |
Isoqqstat |
Implementation of five SAM test statistics in the SAM procedure |
Isoqval |
Obtaining the list of significant genes using the SAM procedure |
IsoRawp |
IsoRawp |
IsoSAMPlot |
Plots produced using the SAM procedure |
IsoTestBH |
Test of monotonic trends using the five test statistics with BH or BY adjustment |
IsoTestSAM |
Obtaining the list of significant genes using the SAM procedure |