bam2counts |
Compute the number of reads fall into specific genomic region |
bam2rpm |
Compute the normalized number of reads (rpm) fall into specific genomic region |
counts2lFC |
Calculate log2FoldChange |
df_final |
an example of the result of doIntegration |
doIntegration |
Do integrative analysis |
doMatch |
Match the RNA-Seq and ChIP-Seq data on the gene level |
doPareto |
Prioritization of genes based on Z scores |
promoter |
an example of promoter region |
res |
an example of the result of doMatch |
test_chip_meta |
meta data of preprocessed ChIP-Seq data |
test_rna_meta |
meta data of preprocessed RNA-Seq data |