A Comprehensive Toolkit for Clinical HLA Informatics

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Documentation for package ‘immunogenetr’ version 0.2.0

• DESCRIPTION file.
• Package NEWS.

Help Pages

ambiguity_table_to_GLstring	ambiguity_table_to_GLstring
GLstring_expand_longer	GLstring_expand_longer
GLstring_genes	GLstring_genes
GLstring_genes_expanded	GLstring_genes_expanded
GLstring_gene_copies_combine	GLstring_gene_copies_combine
GLstring_genotype_ambiguity	GLstring_genotype_ambiguity
GLstring_regex	GLstring_regex
Haplotype_frequencies	Ten HLA-A~C~B~DRB3/4/5~DRB1~DQA1~DQB1~DPA1~DPB1 haplotypes and their frequencies in the global population.
HLA_columns_to_GLstring	HLA_columns_to_GLstring
HLA_column_repair	HLA_column_repair
HLA_dictionary	Data on HLA alleles in the 2008 HLA dictionary
HLA_match_number	HLA_match_number
HLA_match_summary_HCT	HLA_match_summary_HCT
HLA_mismatched_alleles	HLA_mismatched_alleles
HLA_mismatch_base	HLA_mismatch_base
HLA_mismatch_logical	HLA_mismatch_logical
HLA_mismatch_number	HLA_mismatch_number
HLA_prefix_add	HLA_prefix_add
HLA_prefix_remove	HLA_prefix_remove
HLA_truncate	HLA_truncate
HLA_typing_1	Synthetic HLA typing data for 10 individuals for the HLA-A, B, C, DRB1, DRB3/4/5, DQB1, DQA1, DPB1 and DPA1 loci.
HLA_typing_LIS	Synthetic HLA typing data for 10 individuals for the HLA-A, B, C, DRB1, DRB3, DRB4, DRB5, DQB1, DQA1, DPB1 and DPA1 loci. Data formatted to resemble a HistoTrac table.
HLA_validate	HLA_validate
mismatch_table_2010	Consensus mismatch numbers for every possible allele combination at a single locus, from the 2010 publication.
mismatch_table_2016	Consensus mismatch numbers for every possible allele combination at a single locus, from the 2016 publication.
read_HML	read_HML