Hybrid Bayesian Networks Using R and JAGS


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Documentation for package ‘HydeNet’ version 0.10.11

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Hyde-package Hydbrid Decision Networks
%$% Chain together multiple operations.
%>% Chain together multiple operations.
bindPosterior Bind Output From coda Samples
bindSim Bind Output From coda Samples
BJDealer Blackjack Dealer Outcome Probabilities
BlackJack Black Jack Hybrid Decision Network
BlackJackTrain Black Jack Network Training Dataset
compileDecisionModel Compile JAGS Models to Evaluate the Effect of Decisions in a Network
compileJagsModel Compile Jags Model from a Hyde Network
cpt Compute a conditional probability table for a factor given other factors
cpt.formula Compute a conditional probability table for a factor given other factors
cpt.list Compute a conditional probability table for a factor given other factors
customNode Plotting Utilities for Probabilistic Graphical Network
dataframeFactors Hyde Network Utility Functions
decisionOptions Hyde Network Utility Functions
defaultPolicyMatrix Construct Policy and Decision Matrices
expectedParameters List Expected Parameter Names and Expected Variables Names
expectedVariables List Expected Parameter Names and Expected Variables Names
factorFormula Convert Factor Levels in Formula to Numeric Values
factorRegex Produce Regular Expressions for Extracting Factor Names and Levels
factor_reference Hyde Network Utility Functions
fromData Set Node Relationships
fromFormula Set Node Relationships
Hyde Hydbrid Decision Networks
HydeNetSummaries HydeNet Summary Objects
HydeNetwork Define a Probablistic Graphical Network
HydeNetwork.formula Define a Probablistic Graphical Network
HydeNetwork.list Define a Probablistic Graphical Network
HydePlotOptions Plotting Utilities for Probabilistic Graphical Network
HydePosterior Simulated Distributions of a Decision Network
HydeSim Simulated Distributions of a Decision Network
HydeUtilities Hyde Network Utility Functions
inputCPT Compute a conditional probability table for a factor given other factors
inputCPT.formula Compute a conditional probability table for a factor given other factors
inputCPT.list Compute a conditional probability table for a factor given other factors
inputCPTExample Example Conditional Probability Table Resulting from the 'inputCPT' function.
jagsDists JAGS Probability Distributions.
jagsFunctions JAGS Functions Compatible with R.
makeFactorRef Hyde Network Utility Functions
makeJagsReady Hyde Network Utility Functions
mapEdges Plotting Utilities for Probabilistic Graphical Network
matchLevelNumber Hyde Network Utility Functions
matchVars Hyde Network Utility Functions
mergeCustomEdges Plotting Utilities for Probabilistic Graphical Network
mergeCustomNodes Plotting Utilities for Probabilistic Graphical Network
mergeDefaultPlotOpts rdname plot.HydeNetwork
modelToNode Convert a Model Object to a Network Node
modelToNode.cpt Convert a Model Object to a Network Node
modelToNode.default Convert a Model Object to a Network Node
modelToNode.glm Convert a Model Object to a Network Node
modelToNode.lm Convert a Model Object to a Network Node
modelToNode.multinom Convert a Model Object to a Network Node
modelToNode.survreg Convert a Model Object to a Network Node
modelToNode.xtabs Convert a Model Object to a Network Node
nodeFromFunction Hyde Network Utility Functions
PE Pulmonary Embolism Dataset
plot.HydeNetwork Plotting Utilities for Probabilistic Graphical Network
plotHydeNetwork Plotting Utilities for Probabilistic Graphical Network
policyMatrix Construct Policy and Decision Matrices
policyMatrixValues Hyde Network Utility Functions
polyToPow Hyde Network Utility Functions
print.cpt Print Method for CPT objects
print.HydeNetwork Print a HydeNetwork
print.HydeSim Print a Hyde Simulated Distribution Object
Resolution.cpt Conditional Probability Table for resolution of side effects as a function drugs and emesis.
rewriteHydeFormula Rewrite HydeNetwork Graph Model Formula
rToJags Translate R Formula to JAGS
SE.cpt Conditional Probability Table for side effects as a function of emesis and drug.
setDecisionNodes Classify Multiple Nodes as Decision or Utility Nodes
setNode Set Node Relationships
setNodeModels Set Node Properties Using Model Objects
setPolicyValues Assign Default Policy Values
setUtilityNodes Classify Multiple Nodes as Decision or Utility Nodes
summary.HydeNetwork HydeNet Summary Objects
termName Hyde Network Utility Functions
TranslateFormula Translate R Formula to JAGS
update.HydeNetwork Update Probabilistic Graphical Network
validateParameters Hyde Network Utility Functions
vectorProbs Convert a vector to JAGS Probabilities
writeJagsFormula Write the JAGS Formula for a Hyde Node
writeJagsFormula.cpt Write the JAGS Formula for a Hyde Node
writeJagsFormula.glm Write the JAGS Formula for a Hyde Node
writeJagsFormula.lm Write the JAGS Formula for a Hyde Node
writeJagsFormula.multinom Write the JAGS Formula for a Hyde Node
writeJagsFormula.survreg Write the JAGS Formula for a Hyde Node
writeJagsFormula.xtabs Write the JAGS Formula for a Hyde Node
writeJagsModel Write a Node's JAGS Model
writeJagsModel_dbern Write a Node's JAGS Model
writeJagsModel_dcat Write a Node's JAGS Model
writeJagsModel_default Write a Node's JAGS Model
writeJagsModel_determ Write a Node's JAGS Model
writeJagsModel_dnorm Write a Node's JAGS Model
writeJagsModel_dnorm_default Write a Node's JAGS Model
writeJagsModel_dpois Write a Node's JAGS Model
writeNetworkModel Generate JAGS Code for a Network's Model