Convenience Functions for Botanists to Create Specimens Indices


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Documentation for package ‘exsic’ version 1.1.1

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exsic-package Provides botanists with convenience functions to create exsiccatae indices
coll.cite Constructs a final citation of collector names.
exsic Creates three botanical indices (exsiccatae or index of specimens; numerical list of species; index to numbered collections).
format.ASPT A formatting scheme following ASPT (American Society of Plant Taxonomists) conventions for an exsiccatae record.
format.NYBG A formatting scheme following NYBG (New York Botanical Garden) conventions for an exsiccatae record.
format.PK A formatting scheme following PK (Phytokeys) conventions for an exsiccatae record.
format.SBMG A formatting scheme following SBMG (Systematic Botany Monographs) conventions for an exsiccatae record.
index.citations Creates an index of specimen citations
index.collections Creates the index of collectors and their specimes.
index.countries Creates a simple index of countries.
index.species Creates a simple index of species.
index.species.short A condensed list of species (listed within a line).
is.exsic Checks table format
is.format Checks if the data frame conforms to the expectations to a formatting configuration data frame.
is.sortfilter Checks if the data frame conforms to the expectations to sort and filter the exsic database.
potato Wild potato specimen sample list
prepare.table Prepare exsic table
read.exsic Reads a table in .csv format.
section.exsic Creates a section header
sort.specs A sorting and filtering configuration data.frame
strip.final.dot Strips a text of any final dots.
write.exsic Writes the exsiccatae text