CrypticIBDcheck-package |
identify cryptic relatedness in genetic association studies |
countIBS |
calculates counts of 0, 1 and 2 IBS |
CrypticIBDcheck |
identify cryptic relatedness in genetic association studies |
filter.control |
Set options for quality control filtering of data. |
IBD |
Constructor function for objects of class 'IBD' |
IBD-class |
Constructor function for objects of class 'IBD' |
IBDcheck |
estimate IBD coefficients to identify cryptic relatedness in genetic association studies |
new.IBD |
Create a data structure suitable for input to 'IBDcheck' |
Nhlsim |
Example data for the CrypticIBDcheck package |
plot.IBD |
plot estimated IBD coefficients for pairs of study subjects, along with prediction ellipses based on simulated pairs of known relationships |
RutgersMapB36 |
physical and genetic map positions for a collection of markers on chromosome 1 to 22 |
sim.control |
Set options that control gene drop simulation of relationship pairs. |
SNPgenmap |
convert physical map positions on build 36 of the genome to genetic map positions |